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Table 2 Candidate loci of single nucleotide polymorphisms between the Galápagos and the Californian sea lion. Letters used for indicating variable sites correspond to the international ambiguity code. .

From: Galápagos and Californian sea lions are separate species: Genetic analysis of the genus Zalophus and its implications for conservation management

Locus

GenBank accession number GSL/CSL (ENSEMBL template)

Primers 5'-3'

Expected fragment length [bp]

Aligned sequence [bp]

Base composition at variable sites

 
     

GSL

CSL

Cf4*

AM422189/AM422197 (ENSCAFG00000007422, intron 5–6)

F-ACTACGTCACGGAGGAGCTG R-GACAATGGCACGAGGTAGGT

752

328

C

Y

Cf5*

AM422190/AM422198 (ENSCAFG00000004195, intron 3–4)

F-CAAAAGGAAAAATGGCGTTC R-AGAATGCTTTTTGGCTGCTC

718

514

  

Cf7 *

AM422191/AM422199 (ENSCAFG00000010325, intron 2–3)

F-GTCCTGATCGCCATGAACCT R-CACTTTATTCCCAGGGTCTCG

856

856

G

C

Cf8*

AM422192/AM422200 (ENSCAFG00000004948, intron 7–8)

F-ATCTCCCTGCAGAACACCAC R-ACCTTTTCCTGGGAACATCC

803

685

  

ZcwB03MSAT

DQ836321 1)

F-ATTGTACCCAAACCCAGTGC R-TCAGAATGCAATTCAGTCCAAC

383

88

  

ZcwC03MSAT

AM039819 2)

F-CGAAGGCCATGCTCATAACT R-GGTCAGTTATCCTGCCCAAG

303

112

  

ZcwD01MSAT

AM039817 2)

F-TTTACCCAGTTTGCCACCTC R-AACTTCAGAAGGGTCTAAGGAGTTC

517

152

  

ZcwD03SNP

AM422193/AM422201

F-ACCCAGGAACACCTGATGTC R-GGAGGTCTCAAAACAGTGTGC

578

541

T A

Y R

ZcwD08

AM422194/AM422202

F-AACACTGCCTAGAACTTGCACA R-AGAACATTTGCCCTCAGCTC

406

406

  

ZcwE03MSAT

AM0398212) , AM422196/AM422204

F-GCACCACCTTCGGACCTAGT R-TGCCATCTTGTGTGGTGAAT

500

244

Y

C

ZcwA07MSAT

AM040044 2)

F-AATGCTACCCGAACGGTTTT R-TCAATTTCCTGTCTCACCTCTAAA

464

168

  

ZcwG07

AM422195/AM422203

F-GGCAAACTGTGTGATTTTAGGA R-CCTTGCCTTTCCCATAGAAAC

380

339

  

ZcwH09MSAT

AM039820 2)

F-GTGACAGTTAGATATTTTCCAAAGATT R-GCCTAGAAGTTTCTGATCCACCT

325

173

  
  1. 1) reference [56] 2) reference [54]
  2. Loci marked with an asterisk were derived from nuclear genome sequences of Canis familiaris and can be found in the ENSEMBL data base. Remaining loci have been specifically cloned for the Galápagos sea lion and are accessible via GenBank. Sequences containing microsatellite repeats are marked as such (MSAT). Repeat unit stretches were excluded for the analysis