Locus | GenBank accession number GSL/CSL (ENSEMBL template) | Primers 5'-3' | Expected fragment length [bp] | Aligned sequence [bp] | Base composition at variable sites | |
---|---|---|---|---|---|---|
GSL | CSL | |||||
Cf4* | AM422189/AM422197 (ENSCAFG00000007422, intron 5–6) | F-ACTACGTCACGGAGGAGCTG R-GACAATGGCACGAGGTAGGT | 752 | 328 | C | Y |
Cf5* | AM422190/AM422198 (ENSCAFG00000004195, intron 3–4) | F-CAAAAGGAAAAATGGCGTTC R-AGAATGCTTTTTGGCTGCTC | 718 | 514 | ||
Cf7 * | AM422191/AM422199 (ENSCAFG00000010325, intron 2–3) | F-GTCCTGATCGCCATGAACCT R-CACTTTATTCCCAGGGTCTCG | 856 | 856 | G | C |
Cf8* | AM422192/AM422200 (ENSCAFG00000004948, intron 7–8) | F-ATCTCCCTGCAGAACACCAC R-ACCTTTTCCTGGGAACATCC | 803 | 685 | ||
ZcwB03MSAT | DQ836321 1) | F-ATTGTACCCAAACCCAGTGC R-TCAGAATGCAATTCAGTCCAAC | 383 | 88 | ||
ZcwC03MSAT | AM039819 2) | F-CGAAGGCCATGCTCATAACT R-GGTCAGTTATCCTGCCCAAG | 303 | 112 | ||
ZcwD01MSAT | AM039817 2) | F-TTTACCCAGTTTGCCACCTC R-AACTTCAGAAGGGTCTAAGGAGTTC | 517 | 152 | ||
ZcwD03SNP | AM422193/AM422201 | F-ACCCAGGAACACCTGATGTC R-GGAGGTCTCAAAACAGTGTGC | 578 | 541 | T A | Y R |
ZcwD08 | AM422194/AM422202 | F-AACACTGCCTAGAACTTGCACA R-AGAACATTTGCCCTCAGCTC | 406 | 406 | ||
ZcwE03MSAT | AM0398212) , AM422196/AM422204 | F-GCACCACCTTCGGACCTAGT R-TGCCATCTTGTGTGGTGAAT | 500 | 244 | Y | C |
ZcwA07MSAT | AM040044 2) | F-AATGCTACCCGAACGGTTTT R-TCAATTTCCTGTCTCACCTCTAAA | 464 | 168 | ||
ZcwG07 | AM422195/AM422203 | F-GGCAAACTGTGTGATTTTAGGA R-CCTTGCCTTTCCCATAGAAAC | 380 | 339 | ||
ZcwH09MSAT | AM039820 2) | F-GTGACAGTTAGATATTTTCCAAAGATT R-GCCTAGAAGTTTCTGATCCACCT | 325 | 173 |