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Table 1 Disagreement of the different partitions to each other for three sets of nodes.

From: Data congruence, paedomorphosis and salamanders

All Nodes

% Disagreement

Fig. 1

% Disagreement

Fig. 5A

% Disagreement

RAG1 ↔ rRNA

28.78

RAG1 ↔ rRNA

19.67

RAG1 ↔ rRNA

22.33

rRNA ↔ mtDNA

41.02

Mor ↔ rRNA

28.57

Mor ↔ rRNA

32.35

RAG1 ↔ mtDNA

43.30

Mor ↔ RAG1

29.37

Mor ↔ mtDNA

33.33

Mor ↔ rRNA

44.61

Mor ↔ mtDNA

36.07

RAG1 ↔ mtDNA

39.81

Mor ↔ RAG1

44.99

RAG1 ↔ mtDNA

37.80

rRNA ↔ mtDNA

41.58

Mor ↔ mtDNA

55.19

rRNA ↔ mtDNA

38.66

Mor ↔ RAG1

41.67

Mean

Mean

Mean

rRNA

38.14

RAG1

28.94

rRNA

32.09

RAG1

39.02

rRNA

28.97

RAG1

34.60

mtDNA

46.51

Mor

31.33

Mor

35.78

Mor

48.26

mtDNA

37.51

mtDNA

38.24

  1. % Disagreement indicates the percentage of the pairwise comparisons of partitions at which one of the partitions shows a negative value at the node and the approach used (PABA4, PABA3, PABA2, PBS, NDI, PABSA3, PABSA2, or LILD) while the other partition exhibits a positive value at the same node and the same method used. Mean shows the average disagreement each partition has to the other three partitions. Three sets of nodes were compared: 1st) all 50 nodes; 2nd) only the nodes of the analysis of all data (Fig. 1); 3rd) only the nodes of the analysis of the combined molecular data (Fig. 5A).