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Table 2 Assembly parameters

From: Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

 

N reads BT

N reads AT

% reads discarded

Avg.L AT

NRMC

N contigs

N bases (Mb)

Avg. L Contigs

SD

Maximum Contig Length (bp)

N50

Avg. L

SD

Petrosia ficiformis

49,758,556

32,612,454*

34.5

65.4

28,439,277

67,423

29.9

443.3

370.7

7,377

503

926.8

496.6

Crella elegans

26,513,534

25,951,906*

2.1

93.1

16,464,495

71,524

26.7

372.7

261.7

4,637

437

682.1

333.1

Cephalothrix hongkoiensis

51,091,244

26,631,980*

47.9

79.8

14,447,555

76,507

28.8

376.7

242.7

5,198

390

652.8

300.1

Cerebratulus marginatus

51,711,276

46,967,592*

9.2

73.8

22,977,409

109,947

57.1

518.0

394.2

7,731

559

991.0

521.6

Chiton olivaceus

46,265,184

40,889,060*

11.6

98.5

32,085,523

207,559

75.9

366.0

238.6

9,374

372

627.0

305.3

Octopus vulgaris

16,431,468

15,422,631*

6.1

125.0

11,670,780

77,383

41.7

540.0

125.0

16,472

599

1122.9

660.5

Sipunculus nudus

45,973,825

43,842,184**

4.6

100.5

25,679,520

71,960

31.2

431.7

228.0

3,032

437

676.2

262.5

Hormogaster samnitica

50,789,952

47,857,894**

5.8

96.5

32,511,666

190,189

75.9

399.8

312.5

7,319

423

766.6

426.8

Metasiro americanus

24,943,641

23,959,711**

3.9

129.6

19,735,275

101,929

43.9

439.5

423.0

10,407

477

1,010.3

621.7

Alipes grandidieri

32,294,430

31,561,359**

2.3

134.8

25,457,734

162,326

59.9

380.9

306.9

9,323

377

710.7

443.4

  1. Grey background indicates libraries sequenced for 150 bp; otherwise they are 100 bp. Abbreviations: N, number; BT, before thinning and trimming; AT, after thinning and trimming; NMRC, number of reads matched to contigs; Mb, megabases; bp, base pairs; avg., average; L, length; SD, standard deviation; *, thinning limit of 0.05; **, thinning limit of 0.005.