Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

Riesgo, Ana; Andrade, Sónia C S; Sharma, Prashant P; Novo, Marta; Pérez-Porro, Alicia R; Vahtera, Varpu; González, Vanessa L; Kawauchi, Gisele Y; Giribet, Gonzalo

doi:10.1186/1742-9994-9-33

Table 5 Protein names and lengths (in aminoacids, aa) for the five most redundant hits in each transcriptome

From: Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

# Hits	Protein name and [species name]	Putative transposable element	Protein length (aa)	Accession number
*Petrosia ficiformis*
x9	PREDICTED: hypothetical protein LOC100641198 [Amphimedon queenslandica]	-	673	XP_003382742
x9	PREDICTED: hypothetical protein LOC100639583 [Amphimedon queenslandica]	yes	1768	XP_003390293
x10	PREDICTED: RING finger protein 213-like [Amphimedon queenslandica]	-	5361	XP_003389786
x12	ankyrin 2,3/unc44 [Aedes aegypti]	-	789	XP_001649474
x16	PREDICTED: hypothetical protein LOC100637079 [Amphimedon queenslandica]	-	41943	XP_003386025
*Crella elegans*
x25	Collagen protein [Suberites domuncula]	-	282	CAC81019
x36	aggregation factor protein 3, form C [Microciona prolifera]	-	2205	AAC33162
x38	PREDICTED: deleted in malignant brain tumors 1 protein-like [Amphimedon queenslandica]	-	3131	XP_003389240
x46	PREDICTED: hypothetical protein LOC100640736 [Amphimedon queenslandica]	-	5715	XP_003383871
x193	PREDICTED: hypothetical protein LOC100637079 [Amphimedon queenslandica]	-	41943	XP_003386025
*Cephalothrix hongkongiensis*
x14	pol-like protein [Ciona intestinalis]	yes	1235	BAC82623
x14	pol-like protein [Ciona intestinalis]	yes	1263	BAC82626
x15	PREDICTED: similar to ORF2-encoded protein, partial [Hydra magnipapillata]	yes	372	XP_002155414
x15	PREDICTED: Pao retrotransposon peptidase family protein-like [Saccoglossus kowalevskii]	-	1559	XP_002731015
x23	putative zinc finger protein [Schistosoma mansoni]	-	486	CCD80531
*Cerebratulus marginatus*
x9	PREDICTED: hypothetical protein LOC497165 [Danio rerio]	yes	2265	XP_003200870
x11	ORF2-encoded protein [Danio rerio]	yes	1027	BAE46429
x11	PREDICTED: similar to ORF2-encoded protein, partial [Strongylocentrotus purpuratus]	yes	1117	XP_001187755
x11	PREDICTED: similar to ORF2-encoded protein [Strongylocentrotus purpuratus]	yes	1124	XP_001189850
x11	PREDICTED: hypothetical protein LOC100535924 [Danio rerio]	-	1448	XP_003199942
*Octopus vulgaris*
x38	PREDICTED: hypothetical protein LOC100609033 [Pan troglodytes]	yes	255	XP_003317434
x44	PREDICTED: hypothetical protein LOC100597269 [Nomascus leucogenys]	yes	220	XP_003276349
x57	PREDICTED: hypothetical protein LOC100414382, partial [Callithrix jacchus]	yes	178	XP_002762361
x57	PREDICTED: zinc finger protein 91-like [Acyrthosiphon pisum]	-	818	XP_003243211
x90	PREDICTED: hypothetical protein LOC100608502, partial [Pan troglodytes]	yes	211	XP_003315526
*Chiton olivaceus*
x16	predicted protein [Nematostella vectensis]	yes	1079	XP_001630327
x17	PREDICTED: similar to tyrosine recombinase [Strongylocentrotus purpuratus]	-	461	XP_001183896
x22	pol-like protein [Biomphalaria glabrata]	yes	1222	ABN58714
x29	hypothetical protein EAI_13357 [Harpegnathos saltator]	-	172	EFN88744
x48	PREDICTED: similar to ORF2-encoded protein, partial [Hydra magnipapillata]	yes	372	XP_002155414
*Sipunculus nudus*
x7	dopamine beta hydroxylase-like protein, partial [Pomatoceros lamarckii]	-	504	ADB11406
x7	pol-like protein [Ciona intestinalis]	yes	1263	BAC82626
x7	PREDICTED: similar to transposase [Strongylocentrotus purpuratus]	yes	1312	XP_001193486
x9	pol-like protein [Ciona intestinalis]	yes	1235	BAC82623
x11	lectin 1B [Arenicola marina]	-	243	ADO22714
*Hormogaster samnitica*
x15	leechCAM [Hirudo medicinalis]	-	858	AAC47655
x15	pannexin 4 [Aplysia californica]	-	413	NP_001191576
x16	predicted protein [Nematostella vectensis]	-	2047	XP_001624963
x19	hypothetical protein CBG_27119 [Caenorhabditis briggsae AF16]	-	224	CAR99373
x24	tractin [Hirudo medicinalis]	-	1880	AAC47654
*Metasiro americanus*
x14	transglutaminase [Limulus polyphemus]	-	764	2012342A
x15	putative reverse transcriptase [Takifugu rubripes]	yes	851	AAK58879
x30	hypothetical protein BRAFLDRAFT_210900 [Branchiostoma floridae]	-	489	XP_002611360
x39	hypothetical protein BRAFLDRAFT_79800 [Branchiostoma floridae]	-	512	XP_002597956
x53	hypothetical protein BRAFLDRAFT_89523 [Branchiostoma floridae]	-	396	XP_002590717
*Alipes grandidieri*
x55	PREDICTED: similar to predicted protein [Hydra magnipapillata]	yes	1371	XP_002161911
x56	Transposable element Tcb1 transposase [Salmo salar]	yes	281	ACN11475
x57	hypothetical protein TcasGA2_TC002110 [Tribolium castaneum]	yes	346	EEZ99596
x58	hypothetical protein EAG_05969 [Camponotus floridanus]	yes	282	EFN71217
x123	hypothetical protein TcasGA2_TC000717 [Tribolium castaneum]	yes	346	EEZ98274

Their putative transposable element nature is indicated, as well as the Genbank accession number for each protein.

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